prpf4 is essential for cell survival and posterior lateral line primordium migration in zebrafish

J Genet Genomics. 2018 Aug 20;45(8):443-453. doi: 10.1016/j.jgg.2018.05.008. Epub 2018 Aug 7.

Abstract

Prpf4 (pre-mRNA processing factor 4), a key component of spliceosome, plays critical roles in pre-mRNA splicing and its mutations result in retinitis pigmentosa due to photoreceptor defects. In this study, we characterized a zebrafish prpf4t243 mutant harboring a Tol2 transposon-based gene trap cassette in the third intron of the prpf4 gene. Cells in the brain and spinal cord gradually undergo p53-dependent apoptosis after 28 hpf in prpf4t243 mutants, suggesting that a widespread function of prpf4 in neural cell survival. In addition, prpf4 is essential for survival of posterior lateral line primordial (pLLP) cells. prpf4 deficiency perturbs Fgf, Wnt/β-catenin and chemokine signaling pathways and impairs pLLP migration. RNA-Seq analysis suggests that prpf4 deficiency may impair spliceosome assembly, leading to compensatory upregulation of core spliceosomal genes and alteration of pre-mRNA splicing. Taken together, our studies uncover an essential role of prpf4 in pre-mRNA splicing, cell survival and pLLP migration.

Keywords: Apoptosis; Splicing; Zebrafish; pLLP; prpf4.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Apoptosis
  • Brain / cytology
  • Brain / metabolism
  • Cell Movement
  • Cell Survival
  • Gene Expression Regulation, Developmental
  • Introns
  • Lateral Line System / cytology
  • Lateral Line System / embryology
  • Lateral Line System / metabolism*
  • RNA Splicing
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Signal Transduction
  • Spliceosomes / genetics
  • Spliceosomes / metabolism
  • Tumor Suppressor Protein p53 / genetics
  • Tumor Suppressor Protein p53 / metabolism
  • Zebrafish / embryology
  • Zebrafish / genetics
  • Zebrafish / metabolism*
  • Zebrafish Proteins / genetics
  • Zebrafish Proteins / metabolism*

Substances

  • RNA-Binding Proteins
  • Tumor Suppressor Protein p53
  • Zebrafish Proteins
  • prpf4 protein, zebrafish
  • tp53 protein, zebrafish