A Synthetic Microbial Operational Amplifier

ACS Synth Biol. 2018 Sep 21;7(9):2007-2013. doi: 10.1021/acssynbio.8b00138. Epub 2018 Aug 30.

Abstract

Synthetic biology has created oscillators, latches, logic gates, logarithmically linear circuits, and load drivers that have electronic analogs in living cells. The ubiquitous operational amplifier, which allows circuits to operate robustly and precisely has not been built with biomolecular parts. As in electronics, a biological operational-amplifier could greatly improve the predictability of circuits despite noise and variability, a problem that all cellular circuits face. Here, we show how to create a synthetic three-stage inducer-input operational amplifier with a fast CRISPR-based differential-input push-pull stage, a slow transcription-and-translation amplification stage, and a fast-enzymatic output stage. Our "Bio-OpAmp" uses only 5 proteins including dCas9. It expands the toolkit of fundamental analog circuits in synthetic biology and provides a simple circuit motif for robust and precise molecular homeostasis.

Keywords: Bio-OpAmp; dominant pole compensation; gain; negative feedback; small signal model; three-gain-stage amplification.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • CRISPR-Associated Protein 9 / genetics
  • CRISPR-Associated Protein 9 / metabolism
  • Carboxylic Ester Hydrolases / pharmacology
  • Clustered Regularly Interspaced Short Palindromic Repeats / genetics
  • Escherichia coli / genetics
  • RNA, Guide, CRISPR-Cas Systems / metabolism
  • Synthetic Biology / methods*
  • Transcription, Genetic / drug effects

Substances

  • RNA, Guide, CRISPR-Cas Systems
  • CRISPR-Associated Protein 9
  • Carboxylic Ester Hydrolases
  • N-acyl homoserine lactonase