Coupling oligonucleotides possessing a poly-cytosine tag with magnetic ionic liquids for sequence-specific DNA analysis

Chem Commun (Camb). 2018 Sep 11;54(73):10284-10287. doi: 10.1039/c8cc05954c.

Abstract

Oligonucleotide probes were designed with a poly-cytosine region that facilitates stable anchoring to a magnetic ionic liquid support. By tethering a recognition sequence to the poly-C tag, the resulting diblock oligonucleotides distinguished single-nucleotide variants and captured DNA targets from interfering genomic DNA and cell lysate for qPCR amplification.

MeSH terms

  • Cytosine / chemistry*
  • DNA / chemistry*
  • Hydrophobic and Hydrophilic Interactions
  • Ionic Liquids / chemistry*
  • Magnetics*
  • Oligonucleotides / chemistry*
  • Real-Time Polymerase Chain Reaction
  • Sequence Analysis, DNA / methods*
  • Viscosity

Substances

  • Ionic Liquids
  • Oligonucleotides
  • Cytosine
  • DNA