Fitness effects of altering gene expression noise in Saccharomyces cerevisiae

Elife. 2018 Aug 20:7:e37272. doi: 10.7554/eLife.37272.

Abstract

Gene expression noise is an evolvable property of biological systems that describes differences in expression among genetically identical cells in the same environment. Prior work has shown that expression noise is heritable and can be shaped by selection, but the impact of variation in expression noise on organismal fitness has proven difficult to measure. Here, we quantify the fitness effects of altering expression noise for the TDH3 gene in Saccharomyces cerevisiae. We show that increases in expression noise can be deleterious or beneficial depending on the difference between the average expression level of a genotype and the expression level maximizing fitness. We also show that a simple model relating single-cell expression levels to population growth produces patterns consistent with our empirical data. We use this model to explore a broad range of average expression levels and expression noise, providing additional insight into the fitness effects of variation in expression noise.

Keywords: S. cerevisiae; TDH3; competitive growth; evolution; evolutionary biology; gene expression; promoter; selection.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Gene Expression Regulation, Fungal / genetics
  • Genetic Fitness / genetics*
  • Genotype
  • Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating) / genetics*
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Selection, Genetic*
  • Single-Cell Analysis

Substances

  • Saccharomyces cerevisiae Proteins
  • Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)
  • TDH3 protein, S cerevisiae