Photonic quasi-crystals and photonic crystals with certain degrees of disorder can have a broadband light-matter interaction. In this paper, we present the holographic fabrication of graded photonic super-quasi-crystals through pixel-by-pixel phase pattern engineering using a spatial light modulator. Using the same phase pattern arranged in a decagon, we have fabricated graded photonic super-quasi-crystals with five-fold symmetry and multiple levels of gradients and graded photonic super-crystals with rectangular unit super-cells, depending on the Fourier filter. Although a certain degree of disorder was incorporated in the quasi-crystals, we still observed the golden ratio in the diameters of the diffraction rings of the fabricated quasi-crystals, indicating five-fold symmetry. Using direct pixel-by-pixel phase engineering, the same laser projection system, consisting of an integrated spatial light modulator and a reflective optical element, can be used for the fabrication of graded photonic super-crystals with various symmetries. The multi-level gradient effects on the optical properties of an organic light-emitting diode were simulated. When the cathode of an organic light-emitting device is patterned in the graded photonic super-crystals, a light extraction efficiency up to 76% in the visible range can be achieved.