Autophagy-dependent ribosomal RNA degradation is essential for maintaining nucleotide homeostasis during C. elegans development

Elife. 2018 Aug 13:7:e36588. doi: 10.7554/eLife.36588.

Abstract

Ribosome degradation through the autophagy-lysosome pathway is crucial for cell survival during nutrient starvation, but whether it occurs under normal growth conditions and contributes to animal physiology remains unaddressed. In this study, we identified RNST-2, a C. elegans T2 family endoribonuclease, as the key enzyme that degrades ribosomal RNA in lysosomes. We found that loss of rnst-2 causes accumulation of rRNA and ribosomal proteins in enlarged lysosomes and both phenotypes are suppressed by blocking autophagy, which indicates that RNST-2 mediates autophagic degradation of ribosomal RNA in lysosomes. rnst-2(lf) mutants are defective in embryonic and larval development and are short-lived. Remarkably, simultaneous loss of RNST-2 and de novo synthesis of pyrimidine nucleotides leads to complete embryonic lethality, which is suppressed by supplements of uridine or cytidine. Our study reveals an essential role of autophagy-dependent degradation of ribosomal RNA in maintaining nucleotide homeostasis during animal development.

Keywords: C. elegans; autophagy; cell biology; development; lysosome.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Autophagy*
  • Caenorhabditis elegans / enzymology
  • Caenorhabditis elegans / physiology*
  • Caenorhabditis elegans Proteins / genetics
  • Caenorhabditis elegans Proteins / metabolism*
  • Endoribonucleases
  • Gene Deletion
  • Homeostasis*
  • Lysosomes / enzymology
  • Lysosomes / metabolism
  • Nucleotides / metabolism*
  • RNA Stability*
  • RNA, Ribosomal / metabolism*
  • Ribonucleases / genetics
  • Ribonucleases / metabolism*

Substances

  • Caenorhabditis elegans Proteins
  • Nucleotides
  • RNA, Ribosomal
  • Endoribonucleases
  • Ribonucleases
  • rnst-2 ribonuclease, C elegans