A multiplex loop-mediated isothermal amplification assay for rapid screening of Acinetobacter baumannii and D carbapenemase OXA-23 gene

Biosci Rep. 2018 Sep 7;38(5):BSR20180425. doi: 10.1042/BSR20180425. Print 2018 Oct 31.

Abstract

Background: Acinetobacter baumannii is a health burden responsible for various nosocomial infections, and bacteremia in particular. The resistance of A. baumannii to most antibiotics including carbapenem has increased. OXA-23-producing A. baumannii is the chief source of nosocomial outbreaks with carbapenem-resistant A. baumannii Successful antibiotic treatment relies on the accurate and rapid identification of infectious agents and drug resistance. Here, we describe a multiplex loop-mediated isothermal amplification (LAMP) assay for simultaneous and homogeneous identification for A. baumannii infection screening and drug-resistance gene detection. Methods: Four primer pairs were designed to amplify fragments of the recA gene of A. baumannii and the oxa-23 gene. The reaction with a 25 μl of final volume was performed at 63°C for 60 min. For comparative purposes, we used a traditional method of bacterial identification to evaluate assay efficacy. Results: The multiplex LAMP assay enables simultaneous and homogeneous detection of the recA gene of A. baumannii and the oxa-23 gene and requires less than 21 min with no pre-requisite for DNA purification prior to the amplification reaction. The detection is specific to A. baumannii, and the coincidence rate of the multiplex LAMP and the traditional method was 100%. Conclusions: Our data indicate that the multiplex LAMP assay is a rapid, sensitive, simultaneous and homogeneous method for screening of A. baumannii and its drug-resistance gene.

Keywords: Acinetobacter baumannii; D carbapenemase OXA-23 gene; multiplex loop-mediated isothermal amplification; screen.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acinetobacter Infections / diagnosis
  • Acinetobacter Infections / microbiology*
  • Acinetobacter baumannii / drug effects
  • Acinetobacter baumannii / genetics*
  • Bacterial Proteins / genetics*
  • Carbapenems / pharmacology
  • DNA-Binding Proteins / genetics
  • Drug Resistance, Bacterial / drug effects
  • Drug Resistance, Bacterial / genetics
  • Humans
  • Nucleic Acid Amplification Techniques / methods*
  • Rec A Recombinases / genetics
  • Sensitivity and Specificity
  • beta-Lactamases / genetics*

Substances

  • Bacterial Proteins
  • Carbapenems
  • DNA-Binding Proteins
  • RecA protein, Acinetobacter calcoaceticus
  • Rec A Recombinases
  • beta-Lactamases
  • beta-lactamase OXA-23, Acinetobacter baumannii