An unbiased attitude is vital to exploring the Beijing genotype of Mycobacterium tuberculosis

Tuberculosis (Edinb). 2018 Jul:111:193-197. doi: 10.1016/j.tube.2018.06.014. Epub 2018 Jun 30.

Abstract

In 2003 Werngren and Hoffner reported the earliest quantitative mutability study comparing Beijing and non-Beijing strains of Mycobacterium tuberculosis. Their null findings appeared to be at odds with the then-popular hypothesis favoring characterization of the Beijing genotype by mutability. Three recent attempts to reexamine the experimental data have resulted in three successively smaller p-values in the literature, each supposedly buttressing a non-null conclusion. In addition to identifying errors responsible for the three misleading p-values, we focus on salutary lessons that will facilitate future research on microbial mutability.

Keywords: Antibiotic resistance; Beijing genotype; Biological relevance; Fluctuation assay; P-value.

MeSH terms

  • Antitubercular Agents / therapeutic use
  • Bias
  • China / epidemiology
  • DNA, Bacterial / genetics*
  • Data Accuracy*
  • Data Interpretation, Statistical
  • Drug Resistance, Bacterial / genetics*
  • Genotype
  • Humans
  • Molecular Epidemiology
  • Mutation*
  • Mycobacterium tuberculosis / drug effects
  • Mycobacterium tuberculosis / genetics*
  • Phenotype
  • Tuberculosis / diagnosis
  • Tuberculosis / drug therapy
  • Tuberculosis / epidemiology
  • Tuberculosis / microbiology*

Substances

  • Antitubercular Agents
  • DNA, Bacterial