Characterization of the interactions between coumarin-derivatives and acetylcholinesterase: Examination by NMR and docking simulations

J Mol Model. 2018 Jul 14;24(8):207. doi: 10.1007/s00894-018-3751-3.

Abstract

Alzheimer's disease (AD) is one of the most common forms of dementia and a significant threat to the elderly populations, especially in the Western world. The rapid hydrolysis of the principal neurotransmitter into choline and acetate by acetylcholinesterase (AChE) at synapses causes the loss of cognitive response that becomes the real cause of AD. Therefore, inhibition of AChE is the most fundamental therapy among currently available treatments for AD. In this context, we designed and performed molecular recognitions studies of coumarin-based inhibitors towards AChE. STD NMR and Tr-NOESY applications were utilized to evaluate the binding epitope, the dissociation constant (KD) and bound conformations of these inhibitors within this inhibitor-AChE complex. Compound 1, which has a similar inhibition activity to tacrine (a current drug) led in this study as a stronger binder with KD = 30 μM ,even greater than tacrine (KD = 140 μM). Moreover, docking simulations mimic NMR results and provided evidence of synchronizing binding of compound 1 with three sites; the peripheral anionic site, the bottom of the gorge, and the catalytic site. Therefore, we envisioned from our experimental and theoretical results that coumarin-based inhibitors containing a piperidinyl scaffold might be a potential drug candidates for AD in the future.

Keywords: Acetylcholinesterase; Alzheimer’s disease; Inhibitors-protein; Recognition study; STD-NMR; Tr-NOESY.

MeSH terms

  • Acetylcholinesterase / chemistry*
  • Acetylcholinesterase / metabolism
  • Animals
  • Binding Sites
  • Cholinesterase Inhibitors / chemical synthesis
  • Cholinesterase Inhibitors / chemistry*
  • Coumarins / chemical synthesis
  • Coumarins / chemistry*
  • Crystallography, X-Ray
  • Electrophorus / metabolism
  • GPI-Linked Proteins / antagonists & inhibitors
  • GPI-Linked Proteins / chemistry
  • GPI-Linked Proteins / metabolism
  • Humans
  • Magnetic Resonance Spectroscopy
  • Molecular Docking Simulation
  • Nootropic Agents / chemical synthesis
  • Nootropic Agents / chemistry*
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Protein Structure, Secondary
  • Tacrine / chemical synthesis
  • Tacrine / chemistry*
  • Thermodynamics

Substances

  • Cholinesterase Inhibitors
  • Coumarins
  • GPI-Linked Proteins
  • Nootropic Agents
  • Tacrine
  • ACHE protein, human
  • Acetylcholinesterase