A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network

IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):688-693. doi: 10.1109/TCBB.2018.2827373. Epub 2018 Apr 16.

Abstract

An increasing number of studies have indicated that long-non-coding RNAs (lncRNAs) play critical roles in many important biological processes. Predicting potential lncRNA-disease associations can improve our understanding of the molecular mechanisms of human diseases and aid in finding biomarkers for disease diagnosis, treatment, and prevention. In this paper, we constructed a bipartite network based on known lncRNA-disease associations; based on this work, we proposed a novel model for inferring potential lncRNA-disease associations. Specifically, we analyzed the properties of the bipartite network and found that it closely followed a power-law distribution. Moreover, to evaluate the performance of our model, a leave-one-out cross-validation (LOOCV) framework was implemented, and the simulation results showed that our computational model significantly outperformed previous state-of-the-art models, with AUCs of 0.8825, 0.9004, and 0.9292 for known lncRNA-disease associations obtained from the LncRNADisease database, Lnc2Cancer database, and MNDR database, respectively. Thus, our approach may be an excellent addition to the biomedical research field in the future.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology / methods*
  • Databases, Genetic
  • Humans
  • Models, Genetic
  • Models, Statistical
  • Neoplasms / diagnosis
  • Neoplasms / genetics*
  • Prognosis
  • RNA, Long Noncoding / genetics*

Substances

  • RNA, Long Noncoding