LSAT: Liliaceae Simple Sequences Analysis Tool, a web server

Manosh Kumar Biswas; Sathishkumar Natarajan; Dhiman Biswas; Ujjal Kumar Nath; Jong-In Park; Ill-Sup Nou

doi:10.6026/97320630014181

LSAT: Liliaceae Simple Sequences Analysis Tool, a web server

Bioinformation. 2018 Apr 30;14(4):181-182. doi: 10.6026/97320630014181. eCollection 2018.

Authors

Manosh Kumar Biswas¹, Sathishkumar Natarajan¹, Dhiman Biswas², Ujjal Kumar Nath¹, Jong-In Park¹, Ill-Sup Nou¹

Affiliations

¹ Department of Horticulture, Sunchon National University, Suncheon, Jeonnam, 57922 South Korea.
² Department of Computer Science and Engineering, Maulana Abul Kalam Azad University of Technology, WB, India.

Abstract

LSAT is a web-based microsatellite SSR marker designer tool specific for the Liliaceae family. It is developed using HTML, CSS, PHP, Perl and Java scripts. It works without extra add-ons on standard browsers. LSAT provides SSR primer designing service using the web interface. It helps in SSR mining and primer design. LSAT is user friendly with customizable search parameters producing visual output having download options. The current version of LSAT is backed by two data sets, namely, lily EST (Expressed Sequence Tag) from NCBI and lily nr (non redundant) with 4,099 and 216,768 unigenes, respectively. LSAT will be updated regularly upon availability of additional data (either EST and/or transcriptome) on Liliaceae.

Availability: LSAT is available for free at http://210.110.86.160/Lsat/Lsat.html.

Keywords: Lily; SSR-marker; Web-Tool.