Fluorometric aptamer-based determination of ochratoxin A based on the use of graphene oxide and RNase H-aided amplification

Mikrochim Acta. 2018 Jun 30;185(7):347. doi: 10.1007/s00604-018-2885-4.

Abstract

The authors describe a fluorometric assay for ochratoxin A (OTA) that is based on the use of graphene oxide and RNase H-aided amplification. On addition of OTA, cAPT is replaced from the APT/cAPT hybridization complex and then hybridizes with RNA labeled with a fluorophore at the 5'-end. Eventually, the fluorophore is released by RNase H cleavage. As the concentration of OTA increases, more cAPTs are displaced, this leading to fluorescence enhancement (best measured at excitation/emission wavelengths of 495/515 nm). This RNase H-assisted cycle response results in strong signal amplification. The limit of detection, calculated on the basis of a signal to noise ratio of 3, is 0.08 ng·mL-1. Response is linear in the 0.08-200 ng·mL-1 OTA concentration range. The method is highly selective for OTA over ochratoxin B and aflatoxin B1. It was applied to the determination of OTA in red wine samples spiked at levels of 1, 7, and 50 ng·mL-1, and the recoveries ranged from 90.9 to 112%. Graphical abstract Schematic of a novel fluorometric aptasensor for ochratoxin A based on the use of graphene oxide and RNase H-aided amplification.

Keywords: Fluorescence assay; Mycotoxin; Nanomaterials; RNA probe; Red wine.

MeSH terms

  • Aptamers, Nucleotide / chemistry*
  • Aptamers, Nucleotide / genetics
  • Aptamers, Nucleotide / metabolism
  • Base Sequence
  • Biosensing Techniques / methods*
  • Fluorometry
  • Graphite / chemistry*
  • Nucleic Acid Amplification Techniques*
  • Ochratoxins / analysis*
  • Ochratoxins / metabolism
  • Oxides / chemistry*
  • Ribonuclease H / metabolism*
  • Wine / analysis

Substances

  • Aptamers, Nucleotide
  • Ochratoxins
  • Oxides
  • ochratoxin A
  • Graphite
  • Ribonuclease H