Nucleotide sequence and mutational analysis of an immunity repressor gene from Bacillus subtilis temperate phage phi 105

Nucleic Acids Res. 1985 Aug 12;13(15):5441-55. doi: 10.1093/nar/13.15.5441.

Abstract

We have identified and sequenced a bacteriophage phi 105 gene encoding an immunity repressor, the first to be characterized from a temperate phage infecting a Gram-positive host. Using superinfection immunity as an assay for repressor function, the phi 105 repressor gene was located within a 740-bp PvuII-HindIII subfragment near the left end of the phi 105 EcoRI-F fragment. We show that the repressor is specified by the 5'-proximal coding sequence of a translationally overlapping gene pair, transcribed from right to left on the conventional phi 105 map. Comparison of its amino acid sequence (146 residues) with that of a large number of Gram-negative bacterial and phage repressors revealed a putative DNA-binding region between positions 20 and 39. The coding region is preceded by a strong Shine-Dalgarno sequence 5' AAAGGAG 3'. Deletion analysis of the 5'-flanking DNA allowed to identify transcriptional control elements. Their structure, 5' TTGTAT 3' at -35 and 5' TATAAT 3' at -10, strongly suggests that the phi 105 repressor gene is transcribed by the major vegetative form of B. subtilis RNA polymerase, as would be expected for an early phage gene.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacillus subtilis / immunology
  • Bacteriophages / genetics
  • Bacteriophages / immunology*
  • Base Sequence
  • Codon
  • DNA Restriction Enzymes
  • DNA, Recombinant
  • DNA, Viral / genetics
  • DNA, Viral / metabolism
  • Genes, Viral*
  • Plasmids
  • Protein Conformation
  • Repressor Proteins / genetics*
  • Transcription Factors / genetics*
  • Transcription, Genetic

Substances

  • Codon
  • DNA, Recombinant
  • DNA, Viral
  • Repressor Proteins
  • Transcription Factors
  • DNA Restriction Enzymes

Associated data

  • GENBANK/X02799