On-site detection of bovine leukemia virus by a field-deployable automatic nucleic extraction plus insulated isothermal polymerase chain reaction system

J Virol Methods. 2018 Sep:259:116-121. doi: 10.1016/j.jviromet.2018.06.008. Epub 2018 Jun 11.

Abstract

Bovine leukemia virus (BLV) is a contagious, oncogenic deltaretrovirus of cattle with a worldwide distribution. In the US, over 40% of dairy cows are infected with the virus, and evidence of its economic impact is growing. This study evaluated the performance of a field-deployable automatic nucleic acid-extraction/insulated isothermal PCR (iiPCR) system for on-site BLV-proviral DNA detection in dairy cows compared with a conventional laboratory real-time PCR (rt-PCR). Assay performance was verified in parallel tests of 36 archived blood samples with 100% agreement (κ = 1.0; n = 36) between the iiPCR and conventional rt-PCR systems, and the limit of detection of the iiPCR assay was estimated to be 4 copies (genome equivalent) per reaction. The field-deployable iiPCR system was subsequently used on-farm to test freshly collected blood samples, and showed 100% agreement (κ = 1.0; n = 32) with the laboratory rt-PCR system. Fresh blood samples were collected on a second farm and tested on both systems, also with 100% agreement (κ = 1.0; n = 34). The field-deployable iiPCR/POCKIT™ combo system performs as well as a conventional laboratory-based rt-PCR system for detection of BLV proviral DNA in whole blood and may be a useful tool for on-farm evaluation of BLV-infection status in dairy cattle.

Keywords: Bovine leukemia virus; Field-deployable; Insulated isothermal PCR; PCR.

Publication types

  • Evaluation Study
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Automation / methods
  • Cattle
  • DNA, Viral / genetics
  • DNA, Viral / isolation & purification*
  • Enzootic Bovine Leukosis / diagnosis*
  • Enzootic Bovine Leukosis / virology
  • Leukemia Virus, Bovine / genetics
  • Leukemia Virus, Bovine / isolation & purification*
  • Molecular Diagnostic Techniques / methods*
  • Point-of-Care Testing*
  • Polymerase Chain Reaction / methods*
  • Proviruses / genetics
  • Proviruses / isolation & purification*

Substances

  • DNA, Viral