Metabolite extraction for high-throughput FTICR-MS-based metabolomics of grapevine leaves

EuPA Open Proteom. 2016 Mar 5:12:4-9. doi: 10.1016/j.euprot.2016.03.002. eCollection 2016 Sep.

Abstract

In metabolomics there is an ever-growing need for faster and more comprehensive analysis methods to cope with the increase of biological studies. Direct infusion Fourier-transform ion cyclotron-resonance mass spectrometry (DI-FTICR-MS) is used in non-targeted metabolomics to obtain high-resolution snapshots of the metabolic state of a system. In any metabolic profiling study, the establishment of an effective metabolite extraction protocol is paramount. We developed an improved metabolite extraction method, compatible with DI-FTICR-MS-based metabolomics, using grapevine leaves. This extraction protocol allowed the extraction of polar and non-polar compounds, covering all major classes found in plants and increasing metabolome coverage.

Keywords: FTICR-MS; Metabolomics; Vitis vinifera.