Genotype-phenotype correlations of low-frequency variants in the complement system in renal disease and age-related macular degeneration

Clin Genet. 2018 Oct;94(3-4):330-338. doi: 10.1111/cge.13392. Epub 2018 Jul 10.

Abstract

Genetic alterations in the complement system have been linked to a variety of diseases, including atypical hemolytic uremic syndrome (aHUS), C3 glomerulopathy (C3G), and age-related macular degeneration (AMD). We performed sequence analysis of the complement genes complement factor H (CFH), complement factor I (CFI), and complement C3 (C3) in 866 aHUS/C3G and 697 AMD patients. In total, we identified 505 low-frequency alleles, representing 121 unique variants, of which 51 are novel. CFH contained the largest number of unique low-frequency variants (n = 64; 53%), followed by C3 (n = 32; 26%) and CFI (n = 25; 21%). A substantial number of variants were found in both patients groups (n = 48; 40%), while 41 (34%) variants were found only in aHUS/C3G and 32 (26%) variants were AMD specific. Genotype-phenotype correlations between the disease groups identified a higher frequency of protein altering alleles in short consensus repeat 20 (SCR20) of factor H (FH), and in the serine protease domain of factor I (FI) in aHUS/C3G patients. In AMD, a higher frequency of protein-altering alleles was observed in SCR3, SCR5, and SCR7 of FH, the SRCR domain of FI, and in the MG3 domain of C3. In conclusion, we observed a substantial overlap of variants between aHUS/C3G and AMD; however, there is a distinct clustering of variants within specific domains.

Keywords: C3 glomerulopathy; age-related macular degeneration; alternative pathway; atypical hemolytic uremic syndrome; complement system.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Atypical Hemolytic Uremic Syndrome / genetics*
  • Atypical Hemolytic Uremic Syndrome / metabolism
  • Atypical Hemolytic Uremic Syndrome / physiopathology
  • Cohort Studies
  • Complement C3 / genetics*
  • Complement C3 / metabolism
  • Complement Factor H / genetics
  • Complement Factor H / metabolism
  • Complement Factor I / genetics*
  • Complement Factor I / metabolism
  • Genetic Predisposition to Disease
  • Genotype*
  • Glomerulonephritis, Membranous / genetics*
  • Glomerulonephritis, Membranous / metabolism
  • Glomerulonephritis, Membranous / physiopathology
  • Humans
  • Macular Degeneration / genetics*
  • Macular Degeneration / metabolism
  • Macular Degeneration / physiopathology
  • Phenotype*

Substances

  • C3 protein, human
  • CFH protein, human
  • Complement C3
  • Complement Factor H
  • CFI protein, human
  • Complement Factor I