Phylogenetic analysis of porcine reproductive and respiratory syndrome virus isolates from Northern Ireland

Arch Virol. 2018 Oct;163(10):2799-2804. doi: 10.1007/s00705-018-3886-7. Epub 2018 May 29.

Abstract

To investigate the genetic diversity of porcine reproductive and respiratory syndrome virus (PRRSV) in Northern Ireland, the ORF5 gene from nine field isolates was sequenced and phylogenetically analysed. The results revealed relatively high diversity amongst isolates, with 87.6-92.2% identity between farms at the nucleotide level and 84.1-93.5% identity at the protein level. Phylogenetic analysis confirmed that all nine isolates belonged to the European (type 1) genotype and formed a cluster within the subtype 1 subgroup. This study provides the first report on PRRSV isolate diversity in Northern Ireland.

MeSH terms

  • Animals
  • Genetic Variation
  • Genotype
  • Northern Ireland
  • Phylogeny*
  • Porcine Reproductive and Respiratory Syndrome / virology*
  • Porcine respiratory and reproductive syndrome virus / classification*
  • Porcine respiratory and reproductive syndrome virus / genetics
  • Porcine respiratory and reproductive syndrome virus / isolation & purification*
  • Swine
  • Viral Envelope Proteins / genetics

Substances

  • Viral Envelope Proteins