Rapid evolution of the Helicobacter pylori AlpA adhesin in a high gastric cancer risk region from Colombia

PeerJ. 2018 May 25:6:e4846. doi: 10.7717/peerj.4846. eCollection 2018.

Abstract

To be able to survive, Helicobacter pylori must adhere to the gastric epithelial cells of its human host. For this purpose, the bacterium employs an array of adhesins, for example, AlpA. The adhesin AlpA has been proposed as a major adhesin because of its critical role in human stomach colonization. Therefore, understanding how AlpA evolved could be important for the development of new diagnostic strategies. However, the genetic variation and microevolutionary patterns of alpA have not been described in Colombia. The study aim was to describe the variation patterns and microevolutionary process of alpA in Colombian clinical isolates of H. pylori. The existing polymorphisms, which are deviations from the neutral model of molecular evolution, and the genetic differentiation of the alpA gene from Colombian clinical isolates of H. pylori were determined. The analysis shows that gene conversion and purifying selection have shaped the evolution of three different variants of alpA in Colombia.

Keywords: AlpA adhesin.; Gene convergence; Helicobacter pylori; Purifying selection; Rapid evolution.

Grants and funding

This work was supported by Colciencias Grant Contract No. 599-2014 to Gina Méndez and Andrés Julian Gutiérrez-Escobar and a Grant 41030610588 from Instituto Nacional de Cancerología to Maria Mercedes Bravo. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.