Atomic-Resolution Structure of a Class C β-Lactamase and Its Complex with Avibactam

ChemMedChem. 2018 Jul 18;13(14):1437-1446. doi: 10.1002/cmdc.201800213. Epub 2018 Jun 20.

Abstract

β-Lactamases (BLs) are important antibiotic-resistance determinants that significantly compromise the efficacy of valuable β-lactam antibacterial drugs. Thus, combinations with BL inhibitor were developed. Avibactam is the first non-β-lactam BL inhibitor introduced into clinical practice. Ceftazidime-avibactam represents one of the few last-resort antibiotics available for the treatment of infections caused by near-pandrug-resistant bacteria. TRU-1 is a chromosomally encoded AmpC-type BL of Aeromonas enteropelogenes, related to the FOX-type BLs and constitutes a good model for class C BLs. TRU-1 crystals provided ultrahigh-resolution diffraction data for the native enzyme and for its complex with avibactam. A comparison of the native and avibactam-bound structures revealed new details in the conformations of residues relevant for substrate and/or inhibitor binding. Furthermore, a comparison of the TRU-1 and Pseudomonas aeruginosa AmpC avibactam-bound structures revealed two inhibitor conformations that were likely to correspond to two different states occurring during inhibitor carbamylation/recyclization.

Keywords: X-ray diffraction; antibiotics; drug design; enzymes; inhibitors.

MeSH terms

  • Aeromonas / chemistry
  • Aeromonas / drug effects
  • Aeromonas / enzymology*
  • Amino Acid Sequence
  • Azabicyclo Compounds / chemistry
  • Azabicyclo Compounds / pharmacology*
  • Crystallography, X-Ray
  • Drug Design
  • Gram-Negative Bacterial Infections / drug therapy
  • Gram-Negative Bacterial Infections / microbiology
  • Humans
  • Molecular Docking Simulation
  • Protein Conformation
  • Sequence Alignment
  • beta-Lactamase Inhibitors / chemistry
  • beta-Lactamase Inhibitors / pharmacology
  • beta-Lactamases / chemistry*
  • beta-Lactamases / metabolism

Substances

  • Azabicyclo Compounds
  • beta-Lactamase Inhibitors
  • avibactam
  • beta-Lactamases