Prions are proteinaceous infectious agents that are highly resistant to denaturation. Sterilization of prion-contaminated mouse cages requires chemical agents and increased autoclave temperatures that damage traditional cages, thus increasing facility costs. Disposable cages are a possible alternative that might decrease replacement costs without compromising the environment of the mice. We compared our standard protocol of changing traditional cages and bedding once every 2 wk to an experimental protocol using disposable cages in which only the bedding was changed once every 2 wk over an 8-wk period. We hypothesized that disposable cages would retain an acceptable level of cleanliness (measured by ATP swabs and contact plates) for at least 8 wk when bedding is replaced every 14 d. Results from ATP swabs and contact plates showed no difference between the 2 protocols during the 8-wk experiment. Prolonged use (that is, as long as 8 wk) of disposable cages had no additional environmental concerns, compared with traditional cages.