Quantitation of JAK2 V617F Allele Burden by Using the QuantStudio™ 3D Digital PCR System

Methods Mol Biol. 2018:1768:257-273. doi: 10.1007/978-1-4939-7778-9_15.

Abstract

The JAK2 V617F mutation is highly prevalent in patients with myeloproliferative neoplasms (MPN). Furthermore, it has been shown that its allelic burden correlates with hematologic characteristics, drug response, and clinical endpoints in MPN patients. Digital PCR is an emerging technology for sensitive mutation detection and quantitation, based on dilution and high-grade partitioning of a sample. Here, we describe the use of the nanofluidic chip-based QuantStudio™ 3D Digital PCR System for quantitation of the JAK2 V617F mutation.

Keywords: Allele burden; Digital PCR; JAK2 V617F; Myeloproliferative neoplasms; Nanofluidic chip.

MeSH terms

  • Alleles
  • Bone Marrow / pathology
  • DNA / isolation & purification*
  • Humans
  • Janus Kinase 2 / genetics*
  • Lab-On-A-Chip Devices*
  • Mutation
  • Myeloproliferative Disorders / blood
  • Myeloproliferative Disorders / genetics*
  • Myeloproliferative Disorders / pathology
  • Polymerase Chain Reaction / instrumentation*
  • Polymerase Chain Reaction / methods
  • Software

Substances

  • DNA
  • JAK2 protein, human
  • Janus Kinase 2