Quantum Dot-PNA Conjugates for Target-Catalyzed RNA Detection

Bioconjug Chem. 2018 May 16;29(5):1690-1702. doi: 10.1021/acs.bioconjchem.8b00157. Epub 2018 May 3.

Abstract

Detection of pathogenic nucleic acids remains one of the most reliable approaches for the diagnosis of a broad range of diseases. Current PCR-based methods require experienced personnel and cannot be easily used for point-of-care diagnostics, making alternative strategies for the sensitive, reliable, and cost-efficient detection of pathogenic nucleic acids highly desirable. Here, we report an enzyme-free method for the fluorometric detection of RNA that relies on a target-induced fluorophore transfer onto a semiconductor quantum dot (QD), uses PNA probes as selective recognition elements and can be read out with simple and inexpensive equipment. For QD-PNA conjugates with optimized PNA content, limits of detection of dengue RNA in the range of 10 pM to 100 nM can be realized within 5 h in the presence of a high excess of noncomplementary RNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dengue / diagnosis
  • Dengue Virus / isolation & purification
  • Fluorescence Resonance Energy Transfer / methods*
  • Fluorescent Dyes / chemistry*
  • Humans
  • Nucleic Acid Hybridization / methods*
  • Peptide Nucleic Acids / chemistry*
  • Quantum Dots / chemistry*
  • RNA / analysis*
  • RNA, Viral / analysis

Substances

  • Fluorescent Dyes
  • Peptide Nucleic Acids
  • RNA, Viral
  • RNA