Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58

PeerJ. 2018 Apr 9:6:e4599. doi: 10.7717/peerj.4599. eCollection 2018.

Abstract

Many kinases are still 'orphans,' which means knowledge about their substrates, and often also about the processes they regulate, is lacking. Here, DIA1/C3orf58, a member of a novel predicted kinase-like family, is shown to be present in the endoplasmic reticulum and to influence trafficking via the secretory pathway. Subsequently, DIA1 is subjected to phosphoproteomics analysis to cast light on its signalling pathways. A liquid chromatography-tandem mass spectrometry proteomic approach with phosphopeptide enrichment is applied to membrane fractions of DIA1-overexpressing and control HEK293T cells, and phosphosites dependent on the presence of DIA1 are elucidated. Most of these phosphosites belonged to CK2- and proline-directed kinase types. In parallel, the proteomics of proteins immunoprecipitated with DIA1 reported its probable interactors. This pilot study provides the basis for deeper studies of DIA1 signalling.

Keywords: Mass spectrometry; Novel kinases; Phosphoproteomics; Secretory pathway; Signalling.

Grants and funding

The research was supported by the Polish National Science Centre grant 2012/05/B/NZ3/00413 awarded to Krzysztof Pawłowski. The work of Alicja Koscielny was supported by the Polish National Science Centre grant 2016/23/N/NZ3/00108. Jacek Jaworski is a recipient of the Foundation for Polish Science ‘Mistrz’ Professorial Subsidy. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.