Structural view of the helicase reveals that Zika virus uses a conserved mechanism for unwinding RNA

Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):205-213. doi: 10.1107/S2053230X18003813. Epub 2018 Mar 22.

Abstract

Recent studies suggest a link between infection by Zika virus (ZIKV) and the development of neurological complications. The lack of ZIKV-specific therapeutics has alarmed healthcare professionals worldwide. Here, crystal structures of apo and AMPPNP- and Mn2+-bound forms of the essential helicase of ZIKV refined to 1.78 and 1.3 Å resolution, respectively, are reported. The structures reveal a conserved trimodular topology of the helicase. ATP and Mn2+ are tethered between two RecA-like domains by conserved hydrogen-bonding interactions. The binding of ligands induces the movement of backbone Cα and side-chain atoms. Numerous solvent molecules are observed in the vicinity of the AMPPNP, suggesting a role in catalysis. These high-resolution structures could be useful for the design of inhibitors targeting the helicase of ZIKV for the treatment of infections caused by ZIKV.

Keywords: Zika virus; crystal structure; helicase; ligands.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Adenylyl Imidodiphosphate / chemistry
  • Adenylyl Imidodiphosphate / metabolism
  • Amino Acid Sequence
  • Crystallization
  • Crystallography, X-Ray
  • Manganese / chemistry
  • Manganese / metabolism
  • Models, Molecular
  • Protein Conformation
  • Protein Domains
  • RNA Helicases / chemistry*
  • RNA Helicases / metabolism
  • RNA, Viral / chemistry*
  • RNA, Viral / metabolism
  • Sequence Homology
  • Viral Nonstructural Proteins / chemistry*
  • Viral Nonstructural Proteins / metabolism
  • Zika Virus / enzymology*

Substances

  • RNA, Viral
  • Viral Nonstructural Proteins
  • Adenylyl Imidodiphosphate
  • Manganese
  • Adenosine Triphosphate
  • RNA Helicases