Acidovorax monticola sp. nov., isolated from soil

Antonie Van Leeuwenhoek. 2018 Oct;111(10):1925-1934. doi: 10.1007/s10482-018-1083-z. Epub 2018 Apr 7.

Abstract

A novel strain K-4-16T was isolated from forest soil of Namsan Mountain, Seoul, South Korea, and was taxonomically characterized by a polyphasic approach. Strain K-4-16T was observed to be a Gram-staining negative, grayish white-coloured, motile with peritrichous flagella, and rod shaped bacterium. It was able to grow at 15-45 °C, at pH 4.5-10.5, and at 0-4% (w/v) NaCl concentration. Based on the 16S rRNA gene sequence analysis, strain K-4-16T belongs to the genus Acidovorax and is closely related to Acidovorax anthurii CFBP 3232T (98.3% sequence identity), Acidovorax konjaci K2T (97.9% sequence identity), Acidovorax valerianellae CFBP 4730T (97.8% sequence identity), and Acidovorax caeni R-24608T (97.8% sequence identity). The only respiratory quinone was ubiquinone-8. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. The predominant fatty acids of strain K-4-16T were summed feature 3 (C16:1ω7c and/or C16:1ω6c), C16:0, and summed feature 8 (C18:1ω7c and/or C18:1ω6c). The genomic DNA G+C content of this novel strain was 64.7 mol%. The DNA-DNA relatedness between strain K-4-16T and its reference strains were below the threshold value of 70%. The morphological, physiological, chemotaxonomic, and phylogenetic analyses clearly distinguished this strain from its close phylogenetic neighbors. Thus, strain K-4-16T represents a novel species of the genus Acidovorax, for which the name Acidovorax monticola sp. nov. is proposed. The type strain is K-4-16T (= KEMB 9005-570T = KACC 19171T = NBRC 113141T).

Keywords: Acidovorax monticola; Comamonadaceae; Mountain soi; Novel species; Proteobacteria.

MeSH terms

  • Base Composition
  • Betaproteobacteria / classification*
  • Betaproteobacteria / genetics
  • Betaproteobacteria / isolation & purification
  • Forests
  • Metabolomics / methods
  • Molecular Typing
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Soil Microbiology*

Substances

  • RNA, Ribosomal, 16S