Exploring the role of post-translational modifications in regulating α-synuclein interactions by studying the effects of phosphorylation on nanobody binding

Protein Sci. 2018 Jul;27(7):1262-1274. doi: 10.1002/pro.3412.

Abstract

Intracellular deposits of α-synuclein in the form of Lewy bodies are major hallmarks of Parkinson's disease (PD) and a range of related neurodegenerative disorders. Post-translational modifications (PTMs) of α-synuclein are increasingly thought to be major modulators of its structure, function, degradation and toxicity. Among these PTMs, phosphorylation near the C-terminus at S129 has emerged as a dominant pathogenic modification as it is consistently observed to occur within the brain and cerebrospinal fluid (CSF) of post-mortem PD patients, and its level appears to correlate with disease progression. Phosphorylation at the neighboring tyrosine residue Y125 has also been shown to protect against α-synuclein toxicity in a Drosophila model of PD. In the present study we address the potential roles of C-terminal phosphorylation in modulating the interaction of α-synuclein with other protein partners, using a single domain antibody fragment (NbSyn87) that binds to the C-terminal region of α-synuclein with nanomolar affinity. The results reveal that phosphorylation at S129 has negligible effect on the binding affinity of NbSyn87 to α-synuclein while phosphorylation at Y125, only four residues away, decreases the binding affinity by a factor of 400. These findings show that, despite the fact that α-synuclein is intrinsically disordered in solution, selective phosphorylation can modulate significantly its interactions with other molecules and suggest how this particular form of modification could play a key role in regulating the normal and aberrant function of α-synuclein.

Keywords: Parkinson's disease; isothermal titration calorimetry; nanobody); nuclear magnetic resonance; phosphorylation; protein misfolding; single-domain antibody (sdAb; surface plasmon resonance; α-synuclein.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Autopsy
  • Binding Sites
  • Brain / metabolism
  • Humans
  • Parkinson Disease / metabolism
  • Phosphorylation
  • Protein Binding
  • Protein Processing, Post-Translational*
  • Serine / metabolism
  • Single-Domain Antibodies / metabolism*
  • Tyrosine / metabolism
  • alpha-Synuclein / cerebrospinal fluid
  • alpha-Synuclein / chemistry*
  • alpha-Synuclein / metabolism*

Substances

  • SNCA protein, human
  • Single-Domain Antibodies
  • alpha-Synuclein
  • Tyrosine
  • Serine