Gating interaction maps reveal a noncanonical electromechanical coupling mode in the Shaker K+ channel

Nat Struct Mol Biol. 2018 Apr;25(4):320-326. doi: 10.1038/s41594-018-0047-3. Epub 2018 Mar 26.

Abstract

Membrane potential regulates the activity of voltage-dependent ion channels via specialized voltage-sensing modules, but the mechanisms involved in coupling voltage-sensor movement to pore opening remain unclear owing to a lack of resting state structures and robust methods to identify allosteric pathways. Here, using a newly developed interaction-energy analysis, we probe the interfaces of the voltage-sensing and pore modules in the Drosophila Shaker K+ channel. Our measurements reveal unexpectedly strong equilibrium gating interactions between contacts at the S4 and S5 helices in addition to those between S6 and the S4-S5 linker. Network analysis of MD trajectories shows that the voltage-sensor and pore motions are linked by two distinct pathways: a canonical pathway through the S4-S5 linker and a hitherto unknown pathway akin to rack-and-pinion coupling involving the S4 and S5 helices. Our findings highlight the central role of the S5 helix in electromechanical transduction in the voltage-gated ion channel (VGIC) superfamily.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Allosteric Site
  • Animals
  • Drosophila melanogaster
  • Ion Channel Gating
  • Kv1.2 Potassium Channel / chemistry*
  • Membrane Potentials*
  • Molecular Conformation
  • Molecular Dynamics Simulation
  • Mutagenesis
  • Mutation
  • Oocytes / metabolism
  • Protein Interaction Mapping*
  • Recombinant Fusion Proteins / chemistry
  • Shab Potassium Channels / chemistry*
  • Signal Transduction
  • Spectrometry, Fluorescence
  • Stochastic Processes
  • Xenopus laevis / metabolism

Substances

  • Kv1.2 Potassium Channel
  • Recombinant Fusion Proteins
  • Shab Potassium Channels