Escherichia coli transcription factor NusG binds to 70S ribosomes

Mol Microbiol. 2018 Jun;108(5):495-504. doi: 10.1111/mmi.13953. Epub 2018 Apr 6.

Abstract

Transcription and translation are coupled processes in bacteria. A role of transcription elongation cofactor NusG in coupling has been suggested by in vitro structural studies. NMR revealed association of the NusG carboxy-terminal domain with S10 (NusE), implying a direct role for NusG as a bridge linking RNAP and the lead ribosome. Here we present the first in vitro and in vivo evidence of full-length NusG association with mature 70S ribosomes. Binding did not require accessory factors in vitro. Mutating the NusG:S10 binding interface at NusG F165 or NusE M88 and D97 residues weakened NusG:S10 association in vivo and completely abolished it in vitro, supporting the specificity of this interaction. Mutations in the binding interface increased sensitivity to chloramphenicol. This phenotype was suppressed by rpoB*35, an RNAP mutation that reduces replisome-RNAP clashes. We propose that weakened NusG:S10 interaction leads to uncoupling when translation is inhibited, with resulting RNAP backtracking, replication blocks and formation of lethal DNA double-strand breaks.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Aminoglycosides / pharmacology
  • Anti-Bacterial Agents / pharmacology
  • Binding Sites
  • Chloramphenicol / pharmacology
  • DNA Breaks, Double-Stranded
  • Escherichia coli / drug effects
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Mutation
  • Peptide Elongation Factors / genetics
  • Peptide Elongation Factors / metabolism*
  • Ribosomal Proteins / genetics
  • Ribosomal Proteins / metabolism
  • Ribosome Subunits, Large, Bacterial / metabolism*
  • Transcription Elongation, Genetic* / drug effects
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*
  • Transcription Termination, Genetic* / drug effects

Substances

  • Aminoglycosides
  • Anti-Bacterial Agents
  • Escherichia coli Proteins
  • NusG protein, E coli
  • Peptide Elongation Factors
  • Ribosomal Proteins
  • Transcription Factors
  • ribosomal protein S10
  • Chloramphenicol
  • kasugamycin