The structure of hydrogenase-2 from Escherichia coli: implications for H2-driven proton pumping

Biochem J. 2018 Apr 16;475(7):1353-1370. doi: 10.1042/BCJ20180053.

Abstract

Under anaerobic conditions, Escherichia coli is able to metabolize molecular hydrogen via the action of several [NiFe]-hydrogenase enzymes. Hydrogenase-2, which is typically present in cells at low levels during anaerobic respiration, is a periplasmic-facing membrane-bound complex that functions as a proton pump to convert energy from hydrogen (H2) oxidation into a proton gradient; consequently, its structure is of great interest. Empirically, the complex consists of a tightly bound core catalytic module, comprising large (HybC) and small (HybO) subunits, which is attached to an Fe-S protein (HybA) and an integral membrane protein (HybB). To date, efforts to gain a more detailed picture have been thwarted by low native expression levels of Hydrogenase-2 and the labile interaction between HybOC and HybA/HybB subunits. In the present paper, we describe a new overexpression system that has facilitated the determination of high-resolution crystal structures of HybOC and, hence, a prediction of the quaternary structure of the HybOCAB complex.

Keywords: NiFe hydrogenase; crystallography; electrochemistry; hydrogen metabolism; iron–sulfur clusters; metalloenzymes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Crystallography, X-Ray
  • Escherichia coli / enzymology*
  • Hydrogen*
  • Hydrogenase / chemistry*
  • Hydrogenase / metabolism*
  • Protein Conformation
  • Protein Subunits
  • Proton Pumps / physiology*

Substances

  • Protein Subunits
  • Proton Pumps
  • Hydrogen
  • nickel-iron hydrogenase
  • Hydrogenase