How Mg2+ ions lower the SN2@P barrier in enzymatic triphosphate hydrolysis

Chem Commun (Camb). 2018 Apr 3;54(28):3448-3451. doi: 10.1039/c8cc00700d.

Abstract

Our quantum chemical activation strain analyses demonstrate how Mg2+ lowers the barrier of the enzymatic triphosphate hydrolysis through two distinct mechanisms: (a) weakening of the leaving-group bond, thereby decreasing activation strain; and (b) transition state (TS) stabilization through enhanced electrophilicity of the triphosphate PPP substrate, thereby strengthening the interaction with the nucleophile.

MeSH terms

  • DNA-Directed DNA Polymerase / chemistry
  • DNA-Directed DNA Polymerase / metabolism*
  • Hydrolysis
  • Ions / chemistry
  • Ions / metabolism
  • Magnesium / chemistry
  • Magnesium / metabolism*
  • Polyphosphates / chemistry
  • Polyphosphates / metabolism*
  • Quantum Theory

Substances

  • Ions
  • Polyphosphates
  • DNA-Directed DNA Polymerase
  • Magnesium
  • triphosphoric acid