Method for identification of condition-associated public antigen receptor sequences

Elife. 2018 Mar 13:7:e33050. doi: 10.7554/eLife.33050.

Abstract

Diverse repertoires of hypervariable immunoglobulin receptors (TCR and BCR) recognize antigens in the adaptive immune system. The development of immunoglobulin receptor repertoire sequencing methods makes it possible to perform repertoire-wide disease association studies of antigen receptor sequences. We developed a statistical framework for associating receptors to disease from only a small cohort of patients, with no need for a control cohort. Our method successfully identifies previously validated Cytomegalovirus and type one diabetes responsive TCR[Formula: see text] sequences .

Keywords: computational biology; condition associated receptors; human; immunology; inflammation; repertoire sequencing; statistical analysis; systems biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptive Immunity / genetics*
  • Complementarity Determining Regions / genetics
  • Cytomegalovirus / immunology
  • Diabetes Mellitus / genetics
  • Diabetes Mellitus / immunology*
  • Genetic Variation / immunology
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Receptors, Antigen / genetics*
  • Receptors, Antigen / immunology
  • Receptors, Antigen, B-Cell / genetics
  • Receptors, Antigen, T-Cell / genetics
  • Receptors, Antigen, T-Cell / immunology*
  • Receptors, Immunologic / genetics
  • Receptors, Immunologic / immunology

Substances

  • Complementarity Determining Regions
  • Receptors, Antigen
  • Receptors, Antigen, B-Cell
  • Receptors, Antigen, T-Cell
  • Receptors, Immunologic