Integrative analysis of competing endogenous RNA network focusing on long noncoding RNA associated with progression of cutaneous melanoma

Cancer Med. 2018 Apr;7(4):1019-1029. doi: 10.1002/cam4.1315. Epub 2018 Mar 9.

Abstract

Cutaneous melanoma (CM) is the most malignant tumor of skin cancers because of its rapid development and high mortality rate. Long noncoding RNAs (lncRNAs), which play essential roles in the tumorigenesis and metastasis of CM and interplay with microRNAs (miRNAs) and mRNAs, are hopefully considered to be efficient biomarkers to detect deterioration during the progression of CM to improve the prognosis. Bioinformatics analysis was fully applied to predict the vital lncRNAs and the associated miRNAs and mRNAs, which eventually constructed the competing endogenous RNA (ceRNA) network to explain the RNA expression patterns in the progression of CM. Further statistical analysis emphasized the importance of these key genes, which were statistically significantly related to one or few clinical features from the ceRNA network. The results showed the lncRNAs MGC12926 and LINC00937 were verified to be strongly connected with the prognosis of CM patients.

Keywords: ceRNA network; cutaneous melanoma; lncRNA; progression.

MeSH terms

  • Computational Biology* / methods
  • Databases, Genetic
  • Disease Progression
  • Female
  • Gene Expression Profiling / methods
  • Gene Expression Regulation, Neoplastic
  • Gene Ontology
  • Humans
  • Kaplan-Meier Estimate
  • Male
  • Melanoma / genetics*
  • Melanoma / metabolism
  • Melanoma / mortality
  • Melanoma / pathology*
  • Melanoma, Cutaneous Malignant
  • MicroRNAs / genetics*
  • Molecular Sequence Annotation
  • Neoplasm Staging
  • Protein Interaction Mapping
  • Protein Interaction Maps
  • RNA Interference
  • RNA, Long Noncoding / genetics*
  • RNA, Messenger / genetics*
  • Signal Transduction
  • Skin Neoplasms / genetics*
  • Skin Neoplasms / metabolism
  • Skin Neoplasms / mortality
  • Skin Neoplasms / pathology*

Substances

  • MicroRNAs
  • RNA, Long Noncoding
  • RNA, Messenger