Ligand-mediated protein degradation reveals functional conservation among sequence variants of the CUL4-type E3 ligase substrate receptor cereblon

J Biol Chem. 2018 Apr 20;293(16):6187-6200. doi: 10.1074/jbc.M117.816868. Epub 2018 Feb 15.

Abstract

Upon binding to thalidomide and other immunomodulatory drugs, the E3 ligase substrate receptor cereblon (CRBN) promotes proteosomal destruction by engaging the DDB1-CUL4A-Roc1-RBX1 E3 ubiquitin ligase in human cells but not in mouse cells, suggesting that sequence variations in CRBN may cause its inactivation. Therapeutically, CRBN engagers have the potential for broad applications in cancer and immune therapy by specifically reducing protein expression through targeted ubiquitin-mediated degradation. To examine the effects of defined sequence changes on CRBN's activity, we performed a comprehensive study using complementary theoretical, biophysical, and biological assays aimed at understanding CRBN's nonprimate sequence variations. With a series of recombinant thalidomide-binding domain (TBD) proteins, we show that CRBN sequence variants retain their drug-binding properties to both classical immunomodulatory drugs and dBET1, a chemical compound and targeting ligand designed to degrade bromodomain-containing 4 (BRD4) via a CRBN-dependent mechanism. We further show that dBET1 stimulates CRBN's E3 ubiquitin-conjugating function and degrades BRD4 in both mouse and human cells. This insight paves the way for studies of CRBN-dependent proteasome-targeting molecules in nonprimate models and provides a new understanding of CRBN's substrate-recruiting function.

Keywords: E3 ubiquitin ligase; bromodomain-containing protein 4 (BRD4); immunology; mouse; multiple myeloma; proteasome; ubiquitin.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing
  • Animals
  • Azepines / pharmacology
  • Cell Cycle Proteins
  • Cell Line, Tumor
  • Conserved Sequence
  • Cullin Proteins / metabolism*
  • Humans
  • Immunologic Factors / metabolism
  • Immunologic Factors / pharmacology
  • Lenalidomide / pharmacology
  • Ligands
  • Mice
  • Molecular Probes
  • Nuclear Proteins / drug effects
  • Nuclear Proteins / metabolism
  • Peptide Hydrolases / chemistry*
  • Peptide Hydrolases / metabolism*
  • Proteasome Endopeptidase Complex / metabolism
  • Proteolysis*
  • T-Lymphocytes / metabolism
  • Thalidomide / analogs & derivatives
  • Thalidomide / metabolism
  • Thalidomide / pharmacology
  • Transcription Factors / drug effects
  • Transcription Factors / metabolism
  • Triazoles / pharmacology
  • Ubiquitin / metabolism
  • Ubiquitin-Protein Ligases / metabolism*

Substances

  • (+)-JQ1 compound
  • Adaptor Proteins, Signal Transducing
  • Azepines
  • BRD4 protein, human
  • Brd4 protein, mouse
  • CRBN protein, human
  • CUL4A protein, human
  • Cell Cycle Proteins
  • Cul4a protein, mouse
  • Cullin Proteins
  • Immunologic Factors
  • Ligands
  • Molecular Probes
  • Nuclear Proteins
  • Transcription Factors
  • Triazoles
  • Ubiquitin
  • dBET1 compound
  • Thalidomide
  • Ubiquitin-Protein Ligases
  • Peptide Hydrolases
  • Proteasome Endopeptidase Complex
  • Lenalidomide

Associated data

  • PDB/4TZ4
  • PDB/4CI2
  • PDB/4CI1
  • PDB/4CI3
  • PDB/4TZC
  • PDB/4TZU
  • PDB/5FQD