An aptamer-enabled DNA nanobox for protein sensing

Nanomedicine. 2018 Jun;14(4):1161-1168. doi: 10.1016/j.nano.2018.01.018. Epub 2018 Feb 1.

Abstract

DNA nanostructures can show dynamic responses to molecular triggers for a wide variety of applications. While DNA sequence signal triggers are now well-established, there is a critical need for a broader diversity of molecular triggers to drive dynamic responses in DNA nanostructures. DNA aptamers are ideal; they can both seamlessly integrate into DNA nanostructure scaffolds and transduce molecular recognition into functional responses. Here, we report construction and optimization of a DNA origami nanobox locked by a pair of DNA double strands where one strand is a DNA aptamer targeting the malaria biomarker protein Plasmodium falciparum lactate dehydrogenase. The protein acts as the key which enables box opening. We observe highly specific protein-mediated box opening by both transmission electron microscopy and fluorescence. Aptamer-enabled DNA boxes have significant potential for enabling direct responses to proteins and other biomolecules in nanoscale diagnostics, drug delivery and sensing devices.

Keywords: Aptamer; DNA nanotechnology; DNA origami; Malaria diagnosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Aptamers, Nucleotide / chemistry*
  • Biomarkers / metabolism
  • DNA / chemistry*
  • Humans
  • L-Lactate Dehydrogenase / metabolism
  • Malaria, Falciparum / diagnosis
  • Malaria, Falciparum / metabolism
  • Microscopy, Electron, Transmission
  • Nanostructures / chemistry*
  • Nanostructures / ultrastructure
  • Nanotechnology
  • Protozoan Proteins / metabolism

Substances

  • Aptamers, Nucleotide
  • Biomarkers
  • Protozoan Proteins
  • DNA
  • L-Lactate Dehydrogenase