DNA barcoding for identifying synanthropic flesh flies (Diptera, Sarcophagidae) of Colombia

Acta Trop. 2018 Jun:182:291-297. doi: 10.1016/j.actatropica.2018.01.020. Epub 2018 Feb 3.

Abstract

The first step for a successful use of any insect as indicator in forensic sciences is providing a precise taxonomic identification at species level. Due to morphology-based identification of Sarcophaginae flies (Diptera, Sarcophagidae) is often difficult and requires strong taxonomic expertise, their use as forensic indicators has been limited. Consequently, molecular-based approaches have been accepted as alternative means of identification. Thus, we aimed testing the efficiency of the barcode region of the mitochondrial cytochrome oxidase subunit I (COI) gene for identification of synanthropic flesh flies of several species of the genera Peckia, Oxysarcodexia, Ravinia, and Tricharaea collected in Colombia. The 645-bp fragment of COI was amplified and aligned (215 parsimoniously informative variable sites). We calculated Kimura two-parameter genetic distances and reconstruct a Neighbor-Joining phylogenetic tree. Our Neighbor-Joining tree recovered all species as monophyletic, and confirmed a new species of the genus Ravinia as also indicated by the interspecific genetic divergences and morphological observations. We obtained a 100% of identification success. Thus, the COI barcodes showed efficiency as an alternative mean of identification of species of flesh flies collected on decaying organic matter in Colombia.

Keywords: COI; Colombia; DNA ‘Barcoding’; Forensic entomology; Sarcophagidae; Taxonomy.

MeSH terms

  • Animals
  • Colombia
  • DNA Barcoding, Taxonomic / methods*
  • Electron Transport Complex IV / genetics
  • Forensic Sciences / methods
  • Genes, Mitochondrial
  • Phylogeny
  • Sarcophagidae / classification
  • Sarcophagidae / genetics*
  • Sequence Analysis, DNA

Substances

  • Electron Transport Complex IV