Genome wide identification of wheat and Brachypodium type one protein phosphatases and functional characterization of durum wheat TdPP1a

PLoS One. 2018 Jan 16;13(1):e0191272. doi: 10.1371/journal.pone.0191272. eCollection 2018.

Abstract

Reversible phosphorylation is an essential mechanism regulating signal transduction during development and environmental stress responses. An important number of dephosphorylation events in the cell are catalyzed by type one protein phosphatases (PP1), which catalytic activity is driven by the binding of regulatory proteins that control their substrate specificity or subcellular localization. Plants harbor several PP1 isoforms accounting for large functional redundancies. While animal PP1s were reported to play relevant roles in controlling multiple cellular processes, plant orthologs remain poorly studied. To decipher the role of plant PP1s, we compared PP1 genes from three monocot species, Brachypodium, common wheat and rice at the genomic and transcriptomic levels. To gain more insight into the wheat PP1 proteins, we identified and characterized TdPP1a, the first wheat type one protein phosphatase from a Tunisian durum wheat variety Oum Rabiaa3. TdPP1a is highly conserved in sequence and structure when compared to mammalian, yeast and other plant PP1s. We demonstrate that TdPP1a is an active, metallo-dependent phosphatase in vitro and is able to interact with AtI2, a typical regulator of PP1 functions. Also, TdPP1a is capable to complement the heat stress sensitivity of the yeast mutant indicating that TdPP1a is functional also in vivo. Moreover, transient expression of TdPP1a::GFP in tobacco leaves revealed that it is ubiquitously distributed within the cell, with a strong accumulation in the nucleus. Finally, transcriptional analyses showed similar expression levels in roots and leaves of durum wheat seedlings. Interestingly, the expression in leaves is significantly induced following salinity stress, suggesting a potential role of TdPP1a in wheat salt stress response.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Brachypodium / enzymology*
  • Brachypodium / genetics*
  • Conserved Sequence
  • Evolution, Molecular
  • Gene Expression Regulation, Enzymologic
  • Gene Expression Regulation, Plant
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Oryza / enzymology
  • Oryza / genetics
  • Phosphoprotein Phosphatases / genetics*
  • Phosphoprotein Phosphatases / metabolism
  • Phylogeny
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Protein Phosphatase 1 / genetics
  • Protein Phosphatase 1 / metabolism
  • Sequence Homology, Amino Acid
  • Species Specificity
  • Stress, Physiological
  • Triticum / enzymology*
  • Triticum / genetics*

Substances

  • Isoenzymes
  • Plant Proteins
  • Phosphoprotein Phosphatases
  • Protein Phosphatase 1

Grants and funding

The work has been funded by the Tunisian Ministry of Science and Higher Education and French and Tunisian PHC-Utique project (15G0902). Part of this work was funded by the ‘Science by Woman’ program (Fundación Mujeres for Africa) to C.E. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.