Repurposing existing drugs for new AMPK activators as a strategy to extend lifespan: a computer-aided drug discovery study

Biogerontology. 2018 Apr;19(2):133-143. doi: 10.1007/s10522-018-9744-x. Epub 2018 Jan 15.

Abstract

Dietary restriction is one of the several ways which could putatively extend organisms' lifespan, ranging from Saccharomyces cerevisiae to rodents, by activating the AMP-activated protein kinase (AMPK), an ATP/AMP sensor. Extensive researches have shown that aging reduces sensibility of AMPK and eventually causes energy imbalance in cells. Research in mammals' AMPK depicts that this signaling molecule could control autophagy, improve cellular stress resistance and suppress inflammatory responses. Hence, in this study we performed a drug repurposing of 1908 FDA-approved drugs in order to discover putative safe activators of AMPK and to find new applications for existing drugs. For this purpose, FDA-approved drugs were screened by virtual screening and the ligand-protein interactions were carefully inspected. Moreover, through MM/PBSA analysis, the binding affinity of hit compounds in γ and αβ binding sites were investigated. As Cangrelor, Nacitentan, Levoleucovorin and Glisoxepide had lower binding affinities; we predicted that they would probably prove to be more potential activators than C2. However, hit-compounds in αβ binding site, exhibited higher unfavorable binding affinity. Hence, present findings can prove to be valuable for discovering new activators for AMPK.

Keywords: AMPK; Drug repurposing; FDA-approved drugs; Virtual screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenylate Kinase / chemistry
  • Adenylate Kinase / metabolism*
  • Animals
  • Catalytic Domain
  • Computer-Aided Design*
  • Drug Design
  • Drug Discovery / methods*
  • Drug Evaluation, Preclinical
  • Drug Repositioning / methods*
  • Enzyme Activation / drug effects
  • Humans
  • Hydrogen Bonding
  • Ligands
  • Longevity / drug effects*
  • Longevity / physiology
  • Molecular Docking Simulation
  • Molecular Dynamics Simulation
  • United States
  • United States Food and Drug Administration
  • User-Computer Interface

Substances

  • Ligands
  • Adenylate Kinase