The interactome of EBV LMP1 evaluated by proximity-based BioID approach

Virology. 2018 Mar:516:55-70. doi: 10.1016/j.virol.2017.12.033. Epub 2018 Jan 9.

Abstract

Epstein-Barr virus LMP1 is an oncoprotein required for immortalizing B lymphocytes and also plays important roles in transforming non-lymphoid tissue. The discovery of LMP1 protein interactions will likely generate targets to treat EBV-associated cancers. Here, we define the broader LMP1 interactome using the recently developed BioID method. Combined with mass spectrometry, we identified over 1000 proteins across seven independent experiments with direct or indirect relationships to LMP1. Pathway analysis suggests that a significant number of the proteins identified are involved in signal transduction and protein or vesicle trafficking. Interestingly, a large number of proteins thought to be important in the formation of exosomes and protein targeting were recognized as probable LMP1 interacting partners, including CD63, syntenin-1, ALIX, TSG101, HRS, CHMPs, and sorting nexins. Therefore, it is likely that LMP1 modifies protein trafficking and exosome biogenesis pathways. In support of this, knock-down of syntenin-1 and ALIX resulted in reduced exosomal LMP1.

Keywords: Epstein-Barr virus; Exosomes; Extracellular vesicles; Herpesvirus; Interactions; Latent membrane protein 1; Mass spectrometry; Proteomics; Signaling.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biotin / metabolism
  • Calcium-Binding Proteins / genetics
  • Calcium-Binding Proteins / metabolism
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Endosomal Sorting Complexes Required for Transport / genetics
  • Endosomal Sorting Complexes Required for Transport / metabolism
  • Epstein-Barr Virus Infections / genetics
  • Epstein-Barr Virus Infections / metabolism*
  • Epstein-Barr Virus Infections / virology
  • Exosomes / metabolism
  • Exosomes / virology
  • Herpesvirus 4, Human / genetics
  • Herpesvirus 4, Human / metabolism*
  • Host-Pathogen Interactions
  • Humans
  • Mass Spectrometry
  • Protein Binding
  • Protein Interaction Mapping
  • Signal Transduction
  • Syntenins / genetics
  • Syntenins / metabolism
  • Tetraspanin 30 / genetics
  • Tetraspanin 30 / metabolism
  • Viral Matrix Proteins / genetics
  • Viral Matrix Proteins / metabolism*

Substances

  • Calcium-Binding Proteins
  • Cell Cycle Proteins
  • EBV-associated membrane antigen, Epstein-Barr virus
  • Endosomal Sorting Complexes Required for Transport
  • PDCD6IP protein, human
  • Syntenins
  • Tetraspanin 30
  • Viral Matrix Proteins
  • Biotin