Genome-wide analysis and expression profiles of glyoxalase gene families in Chinese cabbage (Brassica rapa L)

PLoS One. 2018 Jan 11;13(1):e0191159. doi: 10.1371/journal.pone.0191159. eCollection 2018.

Abstract

The glyoxalase pathway is composed of glyoxalase I (GLYI) and glyoxalase II (GLYII) and is responsible for the detoxification of a cytotoxic metabolite methylglyoxal (MG) into the nontoxic S-D-lactoylglutathione. The two glyoxalase enzymes play a crucial role in stress tolerance in various plant species. Recently, the GLY gene families have well been analyzed in Arabidopsis, rice and soybean, however, little is known about them in Chinese cabbage (Brassica rapa). Here, 16 BrGLYI and 15 BrGLYII genes were identified in the B. rapa genome, and the BrGLYI and BrGLYII proteins were both clustered into five subfamilies. The classifications, chromosomal distributions, gene duplications, exon-intron structures, localizations, conserved motifs and promoter cis-elements were also predicted and analyzed. In addition, the expression pattern of these genes in different tissues and their response to biotic and abiotic stresses were analyzed using publicly available data and a quantitative real-time PCR analysis (RT-qPCR). The results indicated that the expression profiles of BrGLY genes varied among different tissues. Notably, a number of BrGLY genes showed responses to biotic and abiotic stress treatments, including Plasmodiophora brassicae infection and various heavy metal stresses. Taken together, this study identifies BrGLYI and BrGLYII gene families in B. rapa and offers insight into their roles in plant development and stress resistance, especially in heavy metal stress tolerance and pathogen resistance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brassica rapa / genetics*
  • Gene Expression Profiling*
  • Genes, Plant
  • Lactoylglutathione Lyase / classification
  • Lactoylglutathione Lyase / genetics*
  • Phylogeny

Substances

  • Lactoylglutathione Lyase

Grants and funding

This work was supported by the National Key Program for Research and Development (2016YFD0100202), Chinese Academy of agricultural sciences special Project for basic research (Y2016PT35), and National Infrastructure for Crop Germplasm Resources (NICGR2017-014). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.