Bap (Sil1) regulates the molecular chaperone BiP by coupling release of nucleotide and substrate

Nat Struct Mol Biol. 2018 Jan;25(1):90-100. doi: 10.1038/s41594-017-0012-6. Epub 2018 Jan 1.

Abstract

BiP is the endoplasmic member of the Hsp70 family. BiP is regulated by several co-chaperones including the nucleotide-exchange factor (NEF) Bap (Sil1 in yeast). Bap is a two-domain protein. The interaction of the Bap C-terminal domain with the BiP ATPase domain is sufficient for its weak NEF activity. However, stimulation of the BiP ATPase activity requires full-length Bap, suggesting a complex interplay of these two factors. Here, single-molecule FRET experiments with mammalian proteins reveal that Bap affects the conformation of both BiP domains, including the lid subdomain, which is important for substrate binding. The largely unstructured Bap N-terminal domain promotes the substrate release from BiP. Thus, Bap is a conformational regulator affecting both nucleotide and substrate interactions. The preferential interaction with BiP in its ADP state places Bap at a late stage of the chaperone cycle, in which it coordinates release of substrate and ADP, thereby resetting BiP for ATP and substrate binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / chemistry
  • Adenosine Triphosphatases / chemistry
  • Adenosine Triphosphate / chemistry
  • Animals
  • Anisotropy
  • Area Under Curve
  • Endoplasmic Reticulum Chaperone BiP
  • Fluorescence Resonance Energy Transfer
  • Gene Expression Regulation*
  • Guanine Nucleotide Exchange Factors / chemistry*
  • HSP70 Heat-Shock Proteins / chemistry
  • Heat-Shock Proteins / chemistry*
  • Humans
  • Kinetics
  • Mice
  • Models, Molecular
  • Molecular Chaperones / chemistry*
  • Nucleotides / chemistry*
  • Protein Binding
  • Protein Domains
  • Protein Structure, Secondary
  • Saccharomyces cerevisiae / metabolism

Substances

  • Endoplasmic Reticulum Chaperone BiP
  • Guanine Nucleotide Exchange Factors
  • HSP70 Heat-Shock Proteins
  • Heat-Shock Proteins
  • Molecular Chaperones
  • Nucleotides
  • SIL1 protein, human
  • Adenosine Diphosphate
  • Adenosine Triphosphate
  • Adenosine Triphosphatases