Characterization of CYP154F1 from Thermobifida fusca YX and Extension of Its Substrate Spectrum by Site-Directed Mutagenesis

Chembiochem. 2018 Mar 2;19(5):478-485. doi: 10.1002/cbic.201700565. Epub 2018 Jan 26.

Abstract

Previous studies on cytochrome P450 monooxygenases (CYP) from family 154 reported their substrate promiscuity and high activity. Hence, herein, the uncharacterized family member CYP154F1 is described. Screening of more than 100 organic compounds revealed that CYP154F1 preferably accepts small linear molecules with a carbon chain length of 8-10 atoms. In contrast to thoroughly characterized CYP154E1, CYP154F1 has a much narrower substrate spectrum and lower activity. A structural alignment of homology models of CYP154F1 and CYP154E1 revealed few differences in the active sites of both family members. By gradual mutagenesis of the CYP154F1 active site towards those of CYP154E1, a key residue accounting for the different activities of both enzymes was identified at position 234. Substitution of T234 for large hydrophobic amino acids led to up to tenfold higher conversion rates of small substrates, such as geraniol. Replacement of T234 by small hydrophobic amino acids, valine or alanine, resulted in mutants with extended substrate spectra. These mutants are able to convert some of the larger substrates of CYP154E1, such as (E)-stilbene and (+)-nootkatone.

Keywords: biocatalysis; enzymes; mutagenesis; oxidation; structure-activity relationships.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinobacteria / chemistry
  • Actinobacteria / enzymology*
  • Actinobacteria / genetics
  • Actinobacteria / metabolism
  • Acyclic Monoterpenes
  • Amino Acid Sequence
  • Catalytic Domain
  • Cytochrome P-450 Enzyme System / chemistry
  • Cytochrome P-450 Enzyme System / genetics*
  • Cytochrome P-450 Enzyme System / metabolism*
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Polycyclic Sesquiterpenes
  • Sequence Alignment
  • Sesquiterpenes / metabolism
  • Stilbenes / metabolism
  • Substrate Specificity
  • Terpenes / metabolism

Substances

  • Acyclic Monoterpenes
  • Polycyclic Sesquiterpenes
  • Sesquiterpenes
  • Stilbenes
  • Terpenes
  • Cytochrome P-450 Enzyme System
  • nootkatone
  • geraniol