Structural and sequence variants in patients with Silver-Russell syndrome or similar features-Curation of a disease database

Hum Mutat. 2018 Mar;39(3):345-364. doi: 10.1002/humu.23382. Epub 2018 Jan 11.

Abstract

Silver-Russell syndrome (SRS) is a clinically and molecularly heterogeneous disorder involving prenatal and postnatal growth retardation, and the term SRS-like is broadly used to describe individuals with clinical features resembling SRS. The main molecular subgroups are loss of methylation of the distal imprinting control region (H19/IGF2:IG-DMR) on 11p15.5 (50%) and maternal uniparental disomy of chromosome 7 (5%-10%). Through a comprehensive literature search, we identified 91 patients/families with various structural and small sequence variants, which were suggested as additional molecular defects leading to SRS/SRS-like phenotypes. However, the molecular and phenotypic data of these patients were not standardized and therefore not comparable, rendering difficulties in phenotype-genotype comparisons. To overcome this challenge, we curated a disease database including (epi)genetic phenotypic data of these patients. The clinical features are scored according to the Netchine-Harbison clinical scoring system (NH-CSS), which has recently been accepted as standard by consensus. The structural and sequence variations are reviewed and where necessary redescribed according to recent recommendations. Our study provides a framework for both research and diagnostic purposes through facilitating a standardized comparison of (epi)genotypes with phenotypes of patients with structural/sequence variants.

Keywords: 11p15; LOVD database; NH-CSS; SRS; Silver-Russell syndrome; growth retardation; methylation; sequence variant; structural variant.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Data Curation*
  • Databases, Genetic*
  • Genetic Variation*
  • Humans
  • Phenotype
  • Silver-Russell Syndrome / diagnosis
  • Silver-Russell Syndrome / genetics*