Complete genome sequence of a new strain of Lagenaria siceraria endornavirus from China

Xiaoqin Peng; Hui Pan; Arif Muhammad; Hongliu An; Shouguo Fang; Weimin Li; Songbai Zhang

doi:10.1007/s00705-017-3664-y

Complete genome sequence of a new strain of Lagenaria siceraria endornavirus from China

Arch Virol. 2018 Mar;163(3):805-808. doi: 10.1007/s00705-017-3664-y. Epub 2017 Dec 7.

Authors

Xiaoqin Peng^{1

2}, Hui Pan¹, Arif Muhammad³, Hongliu An¹, Shouguo Fang^{1

3}, Weimin Li⁴, Songbai Zhang^{5

6}

Affiliations

¹ Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Hubei Collaborative Innovation Center for Grain Industry, Yangtze University, Jingzhou, 434025, Hubei, China.
² Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
³ Fujian Province Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China.
⁴ Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China. liweimin01@caas.cn.
⁵ Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Hubei Collaborative Innovation Center for Grain Industry, Yangtze University, Jingzhou, 434025, Hubei, China. yangtze2008@126.com.
⁶ Fujian Province Key Laboratory of Plant Virology, Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, Fujian, China. yangtze2008@126.com.

PMID: 29218572
DOI: 10.1007/s00705-017-3664-y

Abstract

An RNA virus tentatively named Lagenaria siceraria endornavirus-Hubei (LsEV-HuB) was isolated from Lagenaria siceraria var. hispida in Hubei, China. The LsEV-HuB genome consists of 15,098 bp and contains a single open reading frame (ORF) encoding a large protein with several conserved domains, including one helicase domain, one glycosyltransferase domain, two capsular polysaccharide synthesis protein (CPS) domains, and one RNA-dependent RNA polymerase (RdRp) domain. LsEV-HuB has nucleotide and amino acid sequence identities of 72.96% and 77.95%, respectively, to Lagenaria siceraria endornavirus-California (LsEV-CA), the closest relative of LsEV-HuB.

MeSH terms

Amino Acid Sequence
China
Cucurbitaceae / virology*
DNA, Viral / genetics*
Genome Size
Genome, Viral*
Open Reading Frames
Phylogeny*
Plant Diseases / virology
Polyproteins / genetics*
RNA Viruses / classification
RNA Viruses / genetics*
RNA Viruses / isolation & purification
Recombination, Genetic
Sequence Analysis, DNA
Sequence Homology, Amino Acid
Whole Genome Sequencing

Substances

DNA, Viral
Polyproteins

Abstract

MeSH terms

Substances

Grants and funding