SAS-Based Structural Modelling and Model Validation

Adv Exp Med Biol. 2017:1009:87-105. doi: 10.1007/978-981-10-6038-0_6.

Abstract

Small angle scattering of X-rays (SAXS) and neutrons (SANS) is a structural technique to study disordered systems with chaotic orientations of scattering inhomogeneities at low resolution. An important example of such systems are solutions of biological macromolecules. Rapid development in the methodology for solution scattering data interpretation and model building during the last two decades brought the analysis far beyond the determination of just few overall structural parameters (which was the only possibility in the past) and ensured SAS a firm position in the methods palette of the modern life sciences. The advances in the methodology include ab initio approaches for shape and domain structure restoration from scattering curves without a priori structural knowledge, classification and validation of the models, evaluation of potential ambiguity associated with the reconstruction. In rigid body and hybrid modelling approaches, solution scattering is synergistically used with other structural techniques utilizing the complementary information such as atomic models of the components, intramolecular contacts, subunits orientations etc. for the reconstruction of complex systems. The usual requirement of the sample monodispersity has been loosed recently and the technique can now address such systems as weakly bound oligomers and transient complexes. These state-of-the-art methods are described together with the examples of their applications and the possible ways of post-processing of the models.

Keywords: Ab initio reconstruction; Ambiguity assessment; Hybrid modelling; Model validation; Modular proteins; Multisubunit complexes; Solution scattering.

MeSH terms

  • Computer Simulation
  • Data Interpretation, Statistical
  • Humans
  • Models, Molecular*
  • Molecular Conformation
  • Neutron Diffraction / instrumentation
  • Neutron Diffraction / methods
  • Nucleic Acids / chemistry
  • Nucleic Acids / ultrastructure*
  • Proteins / chemistry
  • Proteins / ultrastructure*
  • Scattering, Small Angle*
  • Synchrotrons / instrumentation
  • X-Ray Diffraction / instrumentation
  • X-Ray Diffraction / methods

Substances

  • Nucleic Acids
  • Proteins