Reduction and Stability Analysis of a Transcription-Translation Model of RNA Polymerase

Bull Math Biol. 2018 Feb;80(2):294-318. doi: 10.1007/s11538-017-0372-4. Epub 2017 Dec 6.

Abstract

The aim of this paper is to analyze the dynamical behavior of biological models of gene transcription and translation. We focus on a particular positive feedback loop governing the synthesis of RNA polymerase, needed for transcribing its own gene. We write a high-dimension model based on mass action laws and reduce it to a two-variable model (RNA polymerase and its mRNA) by means of monotone system theory and timescale arguments. We show that the reduced model has either a single globally stable trivial equilibrium in (0, 0), or an unstable zero equilibrium and a globally stable positive one. We give generalizations of this model, notably with a variable growth rate. The dynamical behavior of this system can be related to biological observations on the bacterium Escherichia coli.

Keywords: Biochemical models; Monotone systems; Reduction; Stability; Transcription–translation model.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Simulation
  • DNA-Directed RNA Polymerases / genetics*
  • DNA-Directed RNA Polymerases / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Mathematical Concepts
  • Models, Biological*
  • Protein Biosynthesis
  • Systems Theory
  • Transcription, Genetic

Substances

  • DNA-Directed RNA Polymerases