The nucleotide sequence of a recombinant tomato yellow leaf curl virus strain frequently detected in Sicily isolated from tomato plants carrying the Ty-1 resistance gene

Arch Virol. 2018 Mar;163(3):795-797. doi: 10.1007/s00705-017-3674-9. Epub 2017 Dec 5.

Abstract

In July 2016, an aggressive syndrome of tomato yellow leaf curl disease was reported in Sicily in tomato plants carrying the Ty-1 resistance gene. A total of 34 samples were collected and analyzed. Twenty-seven out of the 34 samples analyzed appeared to contain only recombinant molecules. One full sequence was obtained after cloning. Alignments and plot similarity analysis showed that the genome of the recombinant, named TYLCV-IL[IT:Sic23:16], was mostly derived from tomato yellow leaf curl virus (TYLCV), with a small region of 132 nucleotides in the non-coding region between the stem-loop and the start of the V2 ORF replaced by 124 nucleotides derived from a virus of a different species, tomato yellow leaf curl Sardinia virus. All plants in which the new recombinant was detected belonged to resistant tomato cultivars.

MeSH terms

  • Base Sequence
  • Begomovirus / classification
  • Begomovirus / genetics*
  • Begomovirus / isolation & purification
  • Disease Resistance / genetics
  • Disease Susceptibility
  • Genes, Viral / genetics*
  • High-Throughput Nucleotide Sequencing
  • Plant Diseases / genetics
  • Plant Diseases / immunology
  • Plant Diseases / virology
  • Plant Immunity / genetics
  • Plant Leaves / genetics
  • Plant Leaves / immunology
  • Plant Leaves / virology*
  • Plants, Genetically Modified
  • Recombination, Genetic*
  • Sequence Analysis, DNA
  • Sicily
  • Solanum lycopersicum / genetics
  • Solanum lycopersicum / immunology
  • Solanum lycopersicum / virology*

Supplementary concepts

  • Tomato yellow leaf curl virus