Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose 3,5-epimerase (RfbC)

Acta Crystallogr F Struct Biol Commun. 2017 Dec 1;73(Pt 12):664-671. doi: 10.1107/S2053230X17015849. Epub 2017 Nov 10.

Abstract

The exosporium layer of Bacillus anthracis spores is rich in L-rhamnose, a common bacterial cell-wall component, which often contributes to the virulence of pathogens by increasing their adherence and immune evasion. The biosynthetic pathway used to form the activated L-rhamnose donor dTDP-L-rhamnose consists of four enzymes (RfbA, RfbB, RfbC and RfbD) and is an attractive drug target because there are no homologs in mammals. It was found that co-purifying and screening RfbC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) from B. anthracis in the presence of the other three B. anthracis enzymes of the biosynthetic pathway yielded crystals that were suitable for data collection. RfbC crystallized as a dimer and its structure was determined at 1.63 Å resolution. Two different ligands were bound in the protein structure: pyrophosphate in the active site of one monomer and dTDP in the other monomer. A structural comparison with RfbC homologs showed that the key active-site residues are conserved across kingdoms.

Keywords: Anthrax; Bacillus anthracis; RfbC; dTDP-4-dehydrorhamnose 3,5-epimerase.

MeSH terms

  • Bacillus anthracis / enzymology*
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Carbohydrate Epimerases / chemistry*
  • Carbohydrate Epimerases / metabolism
  • Catalytic Domain
  • Crystallography, X-Ray
  • Diphosphates / chemistry
  • Diphosphates / metabolism
  • Models, Molecular
  • Protein Conformation
  • Structural Homology, Protein

Substances

  • Bacterial Proteins
  • Diphosphates
  • diphosphoric acid
  • Carbohydrate Epimerases
  • dTDP-4-ketorhamnose 3,5-epimerase