Structural insight into the rearrangement of the switch I region in GTP-bound G12A K-Ras

Acta Crystallogr D Struct Biol. 2017 Dec 1;73(Pt 12):970-984. doi: 10.1107/S2059798317015418. Epub 2017 Nov 10.

Abstract

K-Ras, a molecular switch that regulates cell growth, apoptosis and metabolism, is activated when it undergoes a conformation change upon binding GTP and is deactivated following the hydrolysis of GTP to GDP. Hydrolysis of GTP in water is accelerated by coordination to K-Ras, where GTP adopts a high-energy conformation approaching the transition state. The G12A mutation reduces intrinsic K-Ras GTP hydrolysis by an unexplained mechanism. Here, crystal structures of G12A K-Ras in complex with GDP, GTP, GTPγS and GppNHp, and of Q61A K-Ras in complex with GDP, are reported. In the G12A K-Ras-GTP complex, the switch I region undergoes a significant reorganization such that the Tyr32 side chain points towards the GTP-binding pocket and forms a hydrogen bond to the GTP γ-phosphate, effectively stabilizing GTP in its precatalytic state, increasing the activation energy required to reach the transition state and contributing to the reduced intrinsic GTPase activity of G12A K-Ras mutants.

Keywords: G12A K-Ras; GTP hydrolysis; K-Ras; Q61A K-Ras; apoptosis; cancer cell regulation; cell growth regulation; precatalytic state.

MeSH terms

  • Binding Sites
  • Crystallography, X-Ray
  • Guanosine 5'-O-(3-Thiotriphosphate) / metabolism*
  • Guanosine Diphosphate / metabolism*
  • Guanosine Triphosphate / metabolism*
  • Humans
  • Hydrogen Bonding
  • Hydrolysis
  • Models, Molecular
  • Mutation
  • Protein Conformation*
  • Proto-Oncogene Proteins p21(ras) / chemistry*
  • Proto-Oncogene Proteins p21(ras) / genetics
  • Proto-Oncogene Proteins p21(ras) / metabolism*

Substances

  • KRAS protein, human
  • Guanosine Diphosphate
  • Guanosine 5'-O-(3-Thiotriphosphate)
  • Guanosine Triphosphate
  • Proto-Oncogene Proteins p21(ras)