Deciphering how Cpl-7 cell wall-binding repeats recognize the bacterial peptidoglycan

Sci Rep. 2017 Nov 28;7(1):16494. doi: 10.1038/s41598-017-16392-4.

Abstract

Endolysins, the cell wall lytic enzymes encoded by bacteriophages to release the phage progeny, are among the top alternatives to fight against multiresistant pathogenic bacteria; one of the current biggest challenges to global health. Their narrow range of susceptible bacteria relies, primarily, on targeting specific cell-wall receptors through specialized modules. The cell wall-binding domain of Cpl-7 endolysin, made of three CW_7 repeats, accounts for its extended-range of substrates. Using as model system the cell wall-binding domain of Cpl-7, here we describe the molecular basis for the bacterial cell wall recognition by the CW_7 motif, which is widely represented in sequences of cell wall hydrolases. We report the crystal and solution structure of the full-length domain, identify N-acetyl-D-glucosaminyl-(β1,4)-N-acetylmuramyl-L-alanyl-D-isoglutamine (GMDP) as the peptidoglycan (PG) target recognized by the CW_7 motifs, and characterize feasible GMDP-CW_7 contacts. Our data suggest that Cpl-7 cell wall-binding domain might simultaneously bind to three PG chains, and also highlight the potential use of CW_7-containing lysins as novel anti-infectives.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Bacteria / metabolism*
  • Bacteria / virology*
  • Bacteriolysis
  • Bacteriophages / enzymology*
  • Bacteriophages / physiology
  • Binding Sites
  • Cell Wall / metabolism*
  • Endopeptidases / chemistry
  • Endopeptidases / metabolism*
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Peptidoglycan / metabolism*
  • Protein Binding
  • Protein Conformation
  • Protein Interaction Domains and Motifs*
  • Structure-Activity Relationship

Substances

  • Peptidoglycan
  • Endopeptidases
  • endolysin