Sequence variants in nine different genes underlying rare skin disorders in 10 consanguineous families

Int J Dermatol. 2017 Dec;56(12):1406-1413. doi: 10.1111/ijd.13778.

Abstract

Background: Genodermatoses represent genetic anomalies of skin tissues including hair follicles, sebaceous glands, eccrine glands, nails, and teeth. Ten consanguineous families segregating various genodermatosis phenotypes were investigated in the present study.

Methods: Homozygosity mapping, exome, and Sanger sequencing were employed to search for the disease-causing variants in the 10 families.

Results: Exome sequencing identified seven homozygous sequence variants in different families, including: c.27delT in FERMT1; c.836delA in ABHD5; c.2453C>T in ERCC5; c.5314C>T in COL7A1; c.1630C>T in ALOXE3; c.502C>T in PPOX; and c.10G>T in ALDH3A2. Sanger sequencing revealed three homozygous variants: c.1718 + 2A>G in FERMT1; c.10459A>T in FLG; and c.92delT in the KRT14 genes as the underlying genetic cause of skin phenotypes.

Conclusion: This study supports the use of exome sequencing as a powerful, efficient tool for identifying genes that underlie rare monogenic skin disorders.

MeSH terms

  • 1-Acylglycerol-3-Phosphate O-Acyltransferase / genetics
  • Aldehyde Oxidoreductases / genetics
  • Blister / genetics
  • Collagen Type VII / genetics
  • Consanguinity
  • DNA Mutational Analysis
  • DNA-Binding Proteins / genetics
  • Endonucleases / genetics
  • Epidermolysis Bullosa / genetics
  • Epidermolysis Bullosa Dystrophica / genetics
  • Epidermolysis Bullosa Simplex / genetics
  • Exome
  • Female
  • Filaggrin Proteins
  • Flavoproteins / genetics
  • Homozygote
  • Humans
  • INDEL Mutation
  • Ichthyosiform Erythroderma, Congenital / genetics
  • Ichthyosis Vulgaris / genetics
  • Ichthyosis, Lamellar / genetics
  • Intermediate Filament Proteins / genetics
  • Keratin-14 / genetics
  • Lipid Metabolism, Inborn Errors / genetics
  • Lipoxygenase / genetics
  • Male
  • Membrane Proteins / genetics
  • Mitochondrial Proteins / genetics
  • Muscular Diseases / genetics
  • Neoplasm Proteins / genetics
  • Nuclear Proteins / genetics
  • Pedigree
  • Periodontal Diseases / genetics
  • Phenotype
  • Photosensitivity Disorders / genetics
  • Porphyria, Variegate / genetics
  • Protoporphyrinogen Oxidase / genetics
  • Rare Diseases / genetics*
  • Sjogren-Larsson Syndrome / genetics
  • Skin Diseases, Genetic / genetics*
  • Transcription Factors / genetics
  • Xeroderma Pigmentosum / genetics

Substances

  • COL7A1 protein, human
  • Collagen Type VII
  • DNA excision repair protein ERCC-5
  • DNA-Binding Proteins
  • FERMT1 protein, human
  • FLG protein, human
  • Filaggrin Proteins
  • Flavoproteins
  • Intermediate Filament Proteins
  • KRT14 protein, human
  • Keratin-14
  • Membrane Proteins
  • Mitochondrial Proteins
  • Neoplasm Proteins
  • Nuclear Proteins
  • Transcription Factors
  • ALOXE3 protein, human
  • Lipoxygenase
  • Aldehyde Oxidoreductases
  • long-chain-aldehyde dehydrogenase
  • PPOX protein, human
  • Protoporphyrinogen Oxidase
  • 1-Acylglycerol-3-Phosphate O-Acyltransferase
  • ABHD5 protein, human
  • Endonucleases

Supplementary concepts

  • Chanarin-Dorfman Syndrome
  • Poikiloderma of Kindler